networkfit
**********
Fits a stochastic network model (Baumeier et al., Phys. Rev. B 86, 184202 (2012)) to the sites, site energies and couplings of a state file and writes the parameter file for networkgen
The following table contains the defaults input options for the calculator, The default `OPTIONAL` means this option is switched off, if no input is given. 
`REQUIRED` arguments have to be specified, otherwise an error is thrown.

.. list-table::
   :header-rows: 1
   :widths: 30 20 15 15
   :align: center

   * - Property Name
     - Default Value
     - Description
     - Valid Input
   * - job_name
     - system
     - | Input file name without extension, also used for the default
       | file names
     - 
   * - statefile
     - OPTIONAL
     - | State file with site energies and couplings, if not given
       | job_name.hdf5
     - 
   * - frame
     - -1
     - Frame of the state file; -1: the first
     - int
   * - carriers
     - e h
     - | Carrier types to fit (at most two are correlated with
       | each other)
     - 
   * - parameterfile
     - OPTIONAL
     - Parameter file to write, if not given job_name_network.xml
     - 
   * - energyfile
     - OPTIONAL
     - | Optional ASCII file with positions and site energies of
       | the microscopic system, and for each carrier whether the
       | site belongs to one of its traps
     - 
   * - statsfile
     - OPTIONAL
     - | Optional ASCII file with the fitted functions (microscopic,
       | model) for plots
     - 
   * - bin
     - 0.05
     - | Width of the distance bins of all distance dependent functions
       | 
     - float+
   * - correlationcutoff
     - 0
     - | Largest distance for the energy correlation fit; 0: half
       | the box
     - float+
   * - l_b
     - 2 20 1
     - Grid of the short-range moving average: first, last, step
     - 
   * - l_c
     - 20 500 20
     - | Grid of the long-range moving average: first, last, step
       | (values above the number of sites are skipped)
     - 
   * - quantiles
     - 100
     - | Number of quantiles of the standardized coupling residuals;
       | 0: Gaussian
     - int+
   * - points.fit
     - true
     - Fit the point process; false: use the values below
     - bool
   * - points.realizations
     - 4
     - Realizations averaged per evaluation of the fit
     - int+
   * - points.evaluations
     - 150
     - Largest number of evaluations of the fit
     - int+
   * - points.candidates
     - 3
     - | Candidate points per iteration, in units of the number
       | of sites
     - float+
   * - points.maxiterations
     - 200
     - Largest number of iterations of the point process
     - int+
   * - points.hardcore
     - 0.35
     - Hard-core radius if not fitted
     - float+
   * - points.radiusmean
     - 0.15
     - Mean of the random part of the radii if not fitted
     - float+
   * - points.radiusvariance
     - 0.004
     - Variance of the random part of the radii if not fitted
     - float+
   * - traps.find
     - true
     - Identify traps; false: all sites are bulk
     - bool
   * - traps.threshold
     - 0.9
     - | Sites whose normalized density-mode entry exceeds this
       | belong to a trap (the parameter a of the paper)
     - float+
   * - traps.gap
     - 10
     - | A trap releases a carrier at least this many times slower
       | than the first fast mode of the network relaxes
     - float+
   * - traps.mass
     - 0.5
     - | A trap carries at least this fraction of the weight of
       | its side of the slow density mode
     - float+
   * - traps.maxsize
     - 20
     - Largest number of sites of a trap
     - int+
   * - traps.maxsites
     - 5000
     - Largest number of sites for the dense eigenvalue problem
     - int+
   * - seed
     - 1
     - | Seed of the random numbers of the fit and of the parameter
       | file
     - int+
   * - validate
     - 4
     - | Number of model networks of the same size whose statistics
       | are compared with the microscopic system (mean and standard
       | deviation over the networks); 0: none
     - int+
   * - temperature
     - 300
     - | Temperature of the rates for the trap identification and
       | of the finite-size check of the density of states
     - float+
.. note::
   An *xml* file containing the defaults for the `networkfit` calculator can be created via `-p networkfit -o FILENAME` command line options `